MirGeneDB ID | Ete-Mir-493 |
Family name |
MIR-493 (all species) |
Seed |
UGUACAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-493
Cfa-Mir-493
Cpo-Mir-493
Dno-Mir-493
Hsa-Mir-493
Mml-Mir-493
Mmu-Mir-493
Ocu-Mir-493
Rno-Mir-493
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82413472-82413532 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCCUCUGGUCUCCCUCUGGCCUCCAGGGCCUUGUACACUCUAGGCUUUCAUUCAUUGUCGCACACUCAGUGAAGGCCUACUGUGUGCCAGGCCCUCUGCCGGGCAUCGAGUGGGGGAAGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCUCUGGUCUCCCUCU----| CUCC U UC CAUUGUC
GGC AGGGCCU GUACAC UAGGCUUUCAUU \
CCG UCCCGGA CGUGUG AUCCGGAAGUGA G
CGGAAGGGGGUGAGCUACGGG^ UC-- C UC CUCACAC
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-493_5p |
mirBase accession | None |
Sequence |
0- UUGUACACUCUAGGCUUUCAUU -22
Get sequence
|
Star sequence |
Ete-Mir-493_3p* (predicted) |
mirBase accession | None |
Sequence |
39- UGAAGGCCUACUGUGUGCCAGG -61
Get sequence
|