MirGeneDB ID | Ete-Mir-154-P29 |
Family name |
MIR-154 (all species) |
Seed |
AGGUCAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-154-P1
Ete-Mir-154-P2-v1
Ete-Mir-154-P2-v2
Ete-Mir-154-P3a-v1
Ete-Mir-154-P3a-v2
Ete-Mir-154-P4a
Ete-Mir-154-P4b
Ete-Mir-154-P5
Ete-Mir-154-P6
Ete-Mir-154-P7
Ete-Mir-154-P8
Ete-Mir-154-P9
Ete-Mir-154-P10
Ete-Mir-154-P12
Ete-Mir-154-P13
Ete-Mir-154-P14
Ete-Mir-154-P16
Ete-Mir-154-P17
Ete-Mir-154-P18
Ete-Mir-154-P19
Ete-Mir-154-P20-v1
Ete-Mir-154-P20-v2
Ete-Mir-154-P21
Ete-Mir-154-P22
Ete-Mir-154-P24
Ete-Mir-154-P25
Ete-Mir-154-P26
Ete-Mir-154-P27
Ete-Mir-154-P28
Ete-Mir-154-P30
Ete-Mir-154-P31
Ete-Mir-154-P32
Ete-Mir-154-P36
|
Orthologues |
Bta-Mir-154-P29
Cfa-Mir-154-P29
Cpo-Mir-154-P29
Dno-Mir-154-P29
Hsa-Mir-154-P29
Mml-Mir-154-P29
Mmu-Mir-154-P29-v1
Mmu-Mir-154-P29-v2
Rno-Mir-154-P29-v1
Rno-Mir-154-P29-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82308168-82308225 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCGGUGCCAGUGUUCCAGGGUAUCUGAGAGAAUGGUCGACUGGUGACGUGCACUUCAUUUAUGUUGUAGGUCACCAGUUUGACUCUCUAUCAGCACCCAACCCAACUUGGUGCACAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGGUGCCAGUGUUCCA---| AU G AU - G CUUCA
GGGU CUGA AGA GGUCGA CUGGUGAC UGCA U
CCCA GACU UCU UCAGUU GACCACUG AUGU U
GUACACGUGGUUCAACCCAA^ C- A C- U G UGUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The Drosha cut is shifted -1 relative to the other mammals. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ete-Mir-154-P29_5p* |
mirBase accession | None |
Sequence |
0- AAUGGUCGACUGGUGACGUGCA -22
Get sequence
|
Mature sequence |
Ete-Mir-154-P29_3p |
mirBase accession | None |
Sequence |
36- UAGGUCACCAGUUUGACUCUCU -58
Get sequence
|