MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-154-P21

Family name MIR-154 (all species)
Seed AUCCAAG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-154-P1  Ete-Mir-154-P2-v1  Ete-Mir-154-P2-v2  Ete-Mir-154-P3a-v1  Ete-Mir-154-P3a-v2  Ete-Mir-154-P4a  Ete-Mir-154-P4b  Ete-Mir-154-P5  Ete-Mir-154-P6  Ete-Mir-154-P7  Ete-Mir-154-P8  Ete-Mir-154-P9  Ete-Mir-154-P10  Ete-Mir-154-P12  Ete-Mir-154-P13  Ete-Mir-154-P14  Ete-Mir-154-P16  Ete-Mir-154-P17  Ete-Mir-154-P18  Ete-Mir-154-P19  Ete-Mir-154-P20-v1  Ete-Mir-154-P20-v2  Ete-Mir-154-P22  Ete-Mir-154-P24  Ete-Mir-154-P25  Ete-Mir-154-P26  Ete-Mir-154-P27  Ete-Mir-154-P28  Ete-Mir-154-P29  Ete-Mir-154-P30  Ete-Mir-154-P31  Ete-Mir-154-P32  Ete-Mir-154-P36 
Orthologues Bta-Mir-154-P21  Cfa-Mir-154-P21  Cpo-Mir-154-P21  Dno-Mir-154-P21  Hsa-Mir-154-P21  Mml-Mir-154-P21  Mmu-Mir-154-P21  Ocu-Mir-154-P21  Rno-Mir-154-P21 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980297: 82294247-82294309 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCUCCAGCCGGGUCGCUGUUUCCUACUUGAGGAGAAAUUACCCUUGGUGUGUUGGCUUUAUCACGACAAAUCAUCCAAGGACAAUUUCUUGUUGAGUAUCAAAUCCUGCCUCAGCGAUUUGUA
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Structure
        10          20        30        40        50        60 
UCUCCAGCCGGGUCGCU--|   CC    UG G        AC      U   UUGGCUUUA 
                   GUUU  UACU  A GAGAAAUU  CCUUGG GUG         U
                   UAAA  AUGA  U UUCUUUAA  GGAACC UAC         C
AUGUUUAGCGACUCCGUCC^   CU    GU G        CA      -   UAAACAGCA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Mir-154-P21_5p*

mirBase accessionNone
Sequence
0- GGAGAAAUUACCCUUGGUGUGUU -23
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Mature sequence

Ete-Mir-154-P21_3p

mirBase accessionNone
Sequence
41- CAUCCAAGGACAAUUUCUUGUU -63
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