Mir-154-P20-v1

MirGeneDB ID

Ete-Mir-154-P20-v1

Family name

MIR-154 (all species)

Seed

GAGUAUU

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-154-P1 Ete-Mir-154-P2-v1 Ete-Mir-154-P2-v2 Ete-Mir-154-P3a-v1 Ete-Mir-154-P3a-v2 Ete-Mir-154-P4a Ete-Mir-154-P4b Ete-Mir-154-P5 Ete-Mir-154-P6 Ete-Mir-154-P7 Ete-Mir-154-P8 Ete-Mir-154-P9 Ete-Mir-154-P10 Ete-Mir-154-P12 Ete-Mir-154-P13 Ete-Mir-154-P14 Ete-Mir-154-P16 Ete-Mir-154-P17 Ete-Mir-154-P18 Ete-Mir-154-P19 Ete-Mir-154-P20-v2 Ete-Mir-154-P21 Ete-Mir-154-P22 Ete-Mir-154-P24 Ete-Mir-154-P25 Ete-Mir-154-P26 Ete-Mir-154-P27 Ete-Mir-154-P28 Ete-Mir-154-P29 Ete-Mir-154-P30 Ete-Mir-154-P31 Ete-Mir-154-P32 Ete-Mir-154-P36

Orthologues

Bta-Mir-154-P20 Cfa-Mir-154-P20 Cpo-Mir-154-P20-v1 Cpo-Mir-154-P20-v2 Dno-Mir-154-P20-v1 Dno-Mir-154-P20-v2 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Mml-Mir-154-P20-v1 Mml-Mir-154-P20-v2 Mmu-Mir-154-P20-v1 Mmu-Mir-154-P20-v2 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(echTel2)

JH980297: 82282453-82282506 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GGCACACAGUCAGUCCGGUACUUGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCAGUACUAAAUUCGUCAUGGGAAACA

Get precursor sequence

Structure

        10           20        30        40        50      
GGCACACAGUCAGUCCG---|    U   U        U     GU         UUA 
                    GUACU GAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUGA CUU CCUCUAAC GGUAC  UAUGAGUAG   U
ACAAAGGGUACUGCUUAAAU^    -   U        C     AU         UAU 
  110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-154-P20-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Mature sequence

Ete-Mir-154-P20-v1_3p

mirBase accession

None

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

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