MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-154-P2-v1

Family name MIR-154 (all species)
Seed AUGUGGG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-154-P1  Ete-Mir-154-P2-v2  Ete-Mir-154-P3a-v1  Ete-Mir-154-P3a-v2  Ete-Mir-154-P4a  Ete-Mir-154-P4b  Ete-Mir-154-P5  Ete-Mir-154-P6  Ete-Mir-154-P7  Ete-Mir-154-P8  Ete-Mir-154-P9  Ete-Mir-154-P10  Ete-Mir-154-P12  Ete-Mir-154-P13  Ete-Mir-154-P14  Ete-Mir-154-P16  Ete-Mir-154-P17  Ete-Mir-154-P18  Ete-Mir-154-P19  Ete-Mir-154-P20-v1  Ete-Mir-154-P20-v2  Ete-Mir-154-P21  Ete-Mir-154-P22  Ete-Mir-154-P24  Ete-Mir-154-P25  Ete-Mir-154-P26  Ete-Mir-154-P27  Ete-Mir-154-P28  Ete-Mir-154-P29  Ete-Mir-154-P30  Ete-Mir-154-P31  Ete-Mir-154-P32  Ete-Mir-154-P36 
Orthologues Bta-Mir-154-P2-v1  Bta-Mir-154-P2-v2  Cfa-Mir-154-P2-v1  Cfa-Mir-154-P2-v2  Cpo-Mir-154-P2-v1  Cpo-Mir-154-P2-v2  Dno-Mir-154-P2-v1  Dno-Mir-154-P2-v2  Hsa-Mir-154-P2-v1  Hsa-Mir-154-P2-v2  Mml-Mir-154-P2-v1  Mml-Mir-154-P2-v2  Mmu-Mir-154-P2-v1  Mmu-Mir-154-P2-v2  Ocu-Mir-154-P2-v1  Ocu-Mir-154-P2-v2  Rno-Mir-154-P2-v1  Rno-Mir-154-P2-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980297: 82313639-82313693 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAUCCCUGCCUUCGUGCGGUACUUGAAGAAAUGGUUUACCGUCCCACAUACAUUUUAGAUGUGUAUGUGGGAUGGUAAACCGCUUCUUGGUAUCCAGCCUAACCAGCAUAACCAU
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Structure
        10            20        30        40        50       
CAUCCCUGCCUUCGUGC----|     UG     A                     UUUU 
                     GGUACU  AAGAA UGGUUUACCGUCCCACAUACA    \
                     CUAUGG  UUCUU GCCAAAUGGUAGGGUGUAUGU    A
UACCAAUACGACCAAUCCGAC^     --     C                     GUAG 
   110       100        90          80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Ete-Mir-154-P2-v1_5p*

mirBase accessionNone
Sequence
0- AUGGUUUACCGUCCCACAUACA -22
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Mature sequence

Ete-Mir-154-P2-v1_3p

mirBase accessionNone
Sequence
33- UAUGUGGGAUGGUAAACCGCUU -55
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