MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-149

Family name MIR-149 (all species)
Seed CUGGCUC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-149  Cfa-Mir-149  Cpo-Mir-149  Dno-Mir-149  Hsa-Mir-149  Mml-Mir-149  Mmu-Mir-149  Ocu-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980302: 64016398-64016459 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCUCCAGGGUCUCAGGCCGGCGCCCAGGCUCUGGCUCCGUGUCUUCACUCCCGUAACCAUCUGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCGGCUGGAACAGCACAGGCCACUGG
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Structure
        10         20         30         40        50        60 
GCCUCCAGGGUCUCAGG-    -|    A   UCU      -  G     A     GUAACCA 
                  CCGG CGCCC GGC   GGCUCC GU UCUUC CUCCC       \
                  GGUC GCGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGUCACCGGACACGACAA    G^    G   UG-      G  G     -     AGGAGUC 
120       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Ete-Mir-149_5p

mirBase accessionNone
Sequence
0- UCUGGCUCCGUGUCUUCACUCCC -23
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Star sequence

Ete-Mir-149_3p* (predicted)

mirBase accessionNone
Sequence
40- GAGGGAGGGACGGGGGCUGUGC -62
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