MirGeneDB 2.1

MirGeneDB ID

Efe-Novel-5

Family name EFE-NOVEL-5 (all species)
Seed AAAAGGU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. fetida
Node of Origin (family) E. fetida
Genome context
(Efe_combined)
Efet.01.64621: 3288-3349 [-]
Precursor
(pre-Mir +30nt flank)
ACCAGUCGAAGUUUCAUUUGUUAUCAAGUCUAAAAGGUUCAGAUGCUAGGACAAUUAUGUUGGCAAGCGUUCUAUCUUCUGAACCUUUUGGACUUUAUGACCAGUUUUAUCUGCGACUAUAG
Get precursor sequence
Structure
        10          20        30        40        50        60
ACCAGUCGAAGUUUCAUUU--|    C                  UGC      AAUUAUG 
                     GUUAU AAGUCUAAAAGGUUCAGA   UAGGAC       U
                     CAGUA UUCAGGUUUUCCAAGUCU   AUCUUG       U
GAUAUCAGCGUCUAUUUUGAC^    U                  UCU      CGAACGG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Efe-Novel-5_5p

mirBase accessionNone
Sequence
0- UAAAAGGUUCAGAUGCUAGGAC -22
Get sequence
Star sequence

Efe-Novel-5_3p*

mirBase accessionNone
Sequence
40- UCUAUCUUCUGAACCUUUUGGA -62
Get sequence