| MirGeneDB ID | Efe-Novel-2 |
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| Family name |
EFE-NOVEL-2 (all species) |
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| Seed |
GUGACGA |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. fetida
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| Node of Origin (family) |
E. fetida
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Genome context
(Efe_combined) |
Efet.01.119533: 6636-6699 [+]
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Precursor
(pre-Mir +30nt flank) |
AACGGAAGACCACUUGCUGCUCUGGUCGCUGGGACUUUGGACUUUGUCAUCAGCGACAAGACUCAGACUGCUGUGACGAGUUCCGACGACCUUGCGGACGAGCGCUUUCCGGCGUCUACCGUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AACGGAAGACCACUUGCU---| U GU U ACU C U GACAAGA
GCUC G CGC GGG UUGGA UUUGUCA CAGC \
CGAG C GCG UCC AGCCU GAGCAGU GUCG C
GUUGCCAUCUGCGGCCUUUCG^ - AG U AGC U - UCAGACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Efe-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGACUUUGGACUUUGUCAUCAGC -24
Get sequence
|
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| Mature sequence |
Efe-Novel-2_3p |
| mirBase accession | None |
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| Sequence |
41- UGUGACGAGUUCCGACGACCUUG -64
Get sequence
|
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