MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-87-o15

Family name MIR-87 (all species)
Seed UGAGCAA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-87-o12  Efe-Mir-87-o13  Efe-Mir-87-o14  Efe-Mir-87-o16  Efe-Mir-87-o17  Efe-Mir-87-o18 
Orthologues
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.241300: 131-190 [-]
Precursor
(pre-Mir +30nt flank)
GUGAUGGAAUCGCCUGUGCAGUCGGCCGUUACACUUGUAGAUUUGACUCAAACCUGUGGUCCGUAAAGGUGAGCAAAUCUUCAGGUGUGCCUGCUCGACCCCAUUCUCAUCCAGGUGAUG
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Structure
        10        20          30        40        50        60 
GUGAUGGAAUCGCCUGUGCA-    -| CGU        U       A   AA    GUGGU 
                     GUCG GC   UACACUUG AGAUUUG CUC  ACCU     \
                     CAGC CG   GUGUGGAC UCUAAAC GAG  UGGA     C
GUAGUGGACCUACUCUUACCC    U^ UCC        U       -   --    AAUGC 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-87-o15_5p*
mirBase accessionNone
Sequence 
0- ACACUUGUAGAUUUGACUCAAACCU -25
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Mature sequence

Efe-Mir-87-o15_3p
mirBase accessionNone
Sequence 
38- GUGAGCAAAUCUUCAGGUGUGC -60
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