MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-750-P3

Family name MIR-750 (all species)
Seed CAGAUCU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-750-P1  Efe-Mir-750-P2 
Orthologues Aae-Mir-750  Asu-Mir-750  Bge-Mir-750  Bpl-Mir-750  Cgi-Mir-750  Cte-Mir-750  Dma-Mir-750  Dpu-Mir-750  Esc-Mir-750  Hme-Mir-750  Isc-Mir-750  Lan-Mir-750  Lgi-Mir-750  Npo-Mir-750  Obi-Mir-750  Ovu-Mir-750  Sme-Mir-750  Tca-Mir-750 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.1571559: 54-114 [+]
Precursor
(pre-Mir +30nt flank)
AUCAGAGAUGUCUCUGGGCAGAAUUGCAUAAGCUGGAAUAUUGGUUCUUAGCAUCGCUGUUGAAAGUGCCAGAUCUAACUCUUCCGGCUUAUGCAGUCUCCCGUCGGCUGGGAACGUUGAG
Get precursor sequence
Structure
        10           20        30        40         50          
AUCAGAGAUGUCUCUGGGC---|  A               UA-    U   UA  AUCGCUG 
                      AGA UUGCAUAAGCUGGAA   UUGG UCU  GC       \
                      UCU GACGUAUUCGGCCUU   AAUC AGA  CG       U
GAGUUGCAAGGGUCGGCUGCCC^  -               CUC    U   C-  UGAAAGU 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Efe-Mir-750-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- AGCUGGAAUAUUGGUUCUUAGC -22
Get sequence
Mature sequence

Efe-Mir-750-P3_3p

mirBase accessionNone
Sequence
38- CCAGAUCUAACUCUUCCGGCUUA -61
Get sequence