MirGeneDB ID | Efe-Mir-279-o19 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-279-o14
Efe-Mir-279-o15
Efe-Mir-279-o16
Efe-Mir-279-o17
Efe-Mir-279-o18
Efe-Mir-279-o20
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.388011: 41-103 [+]
|
Precursor (pre-Mir +30nt flank) |
NNNNNNNNNNNNNNUUGGUUUCUUGCGAUGGGUGGGUGUCAGUCUAACCAUGUUUCAGAGAUUGUUAGUCAUGACUAGAUUUACACUCAUCUAUGGCGAAGAAACCGGAACUACUACAACGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
NNNNNNNNNNNNNNUUG- -| G C AC UUUCAGAG
GUUUCUU GC AUGGGUGGGUGU AGUCUA CAUG \
CAAAGAA CG UAUCUACUCACA UUAGAU GUAC A
CCGCAACAUCAUCAAGGC G^ G U CA UGAUUGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-279-o19_5p* |
mirBase accession | None |
Sequence |
0- GGUGGGUGUCAGUCUAACCAUG -22
Get sequence
|
Mature sequence |
Efe-Mir-279-o19_3p |
mirBase accession | None |
Sequence |
41- UGACUAGAUUUACACUCAUCUA -63
Get sequence
|