MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-279-o17

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o14  Efe-Mir-279-o15  Efe-Mir-279-o16  Efe-Mir-279-o18  Efe-Mir-279-o19  Efe-Mir-279-o20 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.77336: 1798-1860 [+]
Precursor
(pre-Mir +30nt flank)
GAUUCGAAUACAGGCUACCGAACUGCCGAAGGUGUUUGGCCAUCUGGUGCAUGUUAAAGGAAUCAAAGGUCAUGACUAGAUGUACACUCAUCUCCGGGGUAUCGGUGUUCGUCUUCGUUGGGU
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Structure
        10         20         30        40        50        60  
GAUUCGAAUACAGGCUA-    -|  G   A     UU  GC        G    UUAAAGGA 
                  CCGA ACU CCG AGGUG  UG  CAUCUGGU CAUG        \
                  GGCU UGG GGC UCUAC  AC  GUAGAUCA GUAC        A
UGGGUUGCUUCUGCUUGU    A^  -   C     UC  AU        -    UGGAAACU 
 120       110       100         90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Mir-279-o17_5p*

mirBase accessionNone
Sequence
0- GGUGUUUGGCCAUCUGGUGCAUG -23
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Mature sequence

Efe-Mir-279-o17_3p

mirBase accessionNone
Sequence
42- UGACUAGAUGUACACUCAUCU -63
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