MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-278-P1-v1

Family name MIR-278 (all species)
Seed CGGUGGG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-278-P1-v2  Efe-Mir-278-P2 
Orthologues Aae-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Cgi-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Esc-Mir-278  Hme-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Npo-Mir-278  Obi-Mir-278  Ovu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Sko-Mir-278  Sme-Mir-278  Spu-Mir-278  Xbo-Mir-278 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)
Efet.01.1652561: 479-543 [+]
Precursor
(pre-Mir +30nt flank)
AACGGGCAACGGUUUCUAAUUCUCGCCCUCACGGACGAAAGCCUCAGUUAGAUCUCUGGAGAGCUGUCUCAGAUCGGUGGGACUUUCGUUCGUCUGGGAGAGAAGGUUCGAACUUCAGACUUACC
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Structure
        10          20        30        40        50        60   
AACGGGCAACGGUUUCUAA--|    G   UC           C    GUUA    UCUGGAGA 
                     UUCUC CCC  ACGGACGAAAG CUCA    GAUC        \
                     AAGAG GGG  UGCUUGCUUUC GGGU    CUAG        G
CCAUUCAGACUUCAAGCUUGG^    A   UC           A    GG--    ACUCUGUC 
   120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Mir-278-P1-v1_5p*

mirBase accessionNone
Sequence
0- ACGGACGAAAGCCUCAGUUAGAUC -24
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Mature sequence

Efe-Mir-278-P1-v1_3p

mirBase accessionNone
Sequence
43- UCGGUGGGACUUUCGUUCGUCU -65
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