MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-2690-P4

Family name MIR-2690 (all species)
Seed GUGAAAG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-2690-P1  Efe-Mir-2690-P2  Efe-Mir-2690-P3 
Orthologues Cte-Mir-2690 
Node of Origin (locus) E. fetida
Node of Origin (family) Annelida
Genome context
(Efe_combined)
Efet.01.1631089: 223-286 [+]
Precursor
(pre-Mir +30nt flank)
ACAAAGCCACAGACAGAGAGACGGCGAUCAACCCUGGACUCUCUGGCACGCAGUGUCAUUUGCUAUGUCUGUGUGAAAGUGAGGCCAGUGUGGUUCAUCGUCUCAACGCACAACACUAUACAAU
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Structure
        10           20        30        40        50        60 
ACAAAGCCACAGACAGA---|     GC  UCA  C    A   U  GG      GUGUCAUU 
                    GAGACG  GA   AC CUGG CUC CU  CACGCA        \
                    CUCUGC  CU   UG GACC GAG GA  GUGUGU        U
UAACAUAUCACAACACGCAA^     UA  UGG  U    G   U  AA      CUGUAUCG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Efe-Mir-2690-P4_5p*

mirBase accessionNone
Sequence
0- ACCCUGGACUCUCUGGCACGCA -22
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Mature sequence

Efe-Mir-2690-P4_3p

mirBase accessionNone
Sequence
41- UGUGAAAGUGAGGCCAGUGUGGU -64
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