MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-2-o45

Family name MIR-2 (all species)
Seed AUCACAG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-2-o44  Efe-Mir-2-o46  Efe-Mir-2-o47  Efe-Mir-2-o48  Efe-Mir-2-o49  Efe-Mir-2-o50 
Orthologues
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.128711: 2118-2173 [+]
Precursor
(pre-Mir +30nt flank)
GCUAGGACAAAUGUGGCCAACAUGUGUAGGUGUCCAAAUUGACUGGGAUGCGUUUUUCUGUUCAUAUCACAGCCAAUUUGGUCAUCUAGCUGUUUGCUCAUCAGCUUGAAGCCGAA
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Structure
        10            20        30        40        50       
GCUAGGACAAAUGUGGCC----|   U  G      U        A   G    CGUUUU 
                      AACA GU UAGGUG CCAAAUUG CUG GAUG      U
                      UUGU CG AUCUAC GGUUUAAC GAC CUAU      C
AAGCCGAAGUUCGACUACUCGU^   -  -      U        C   A    ACUUGU 
    110       100         90         80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Mir-2-o45_5p*

mirBase accessionNone
Sequence
0- UGUCCAAAUUGACUGGGAUGCG -22
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Mature sequence

Efe-Mir-2-o45_3p

mirBase accessionNone
Sequence
34- UAUCACAGCCAAUUUGGUCAUC -56
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