| MirGeneDB ID | Efe-Mir-1996-P2 |
|---|
| Family name |
MIR-1996 (all species) |
|---|
| Seed |
UCAAGUG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-1996-P1
Efe-Mir-1996-P3
|
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| Orthologues |
Cte-Mir-1996
|
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| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Annelida
|
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Genome context
(Efe_combined) |
Efet.01.40739: 1521-1580 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AAGGAGGGAACUAACCAGCUCGUUGAGGGUUUCAAGUGAGGUCAGUGCUGCUCGAUUUUUUUCAGCAGCUGUACUGUCUUCGUUUGAUAUCAGCUGCCGAGCGUUUUCGUCGUAAUUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGGAGGGAACUAACCA- UUGAG-| U U U CGAUUU
GCUCG GGU UCAAGUGAGG CAGUGC GCU U
CGAGC CUA AGUUUGCUUC GUCAUG CGA U
UACUUAAUGCUGCUUUUG CGUCGA^ U U U CGACUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Efe-Mir-1996-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCAAGUGAGGUCAGUGCUGCU -22
Get sequence
|
|---|
| Star sequence |
Efe-Mir-1996-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CUGUACUGUCUUCGUUUGAUAU -60
Get sequence
|
|---|
