MirGeneDB ID | Efe-Mir-1994 |
---|---|
Family name | MIR-1994 (all species) |
Seed | GAGACAG |
Species | Common brandling worm (Eisenia fetida) |
MiRBase ID | |
Paralogues | |
Orthologues | Cgi-Mir-1994-P1 Cgi-Mir-1994-P2 Cte-Mir-1994 Esc-Mir-1994-P1 Esc-Mir-1994-P2 Lan-Mir-1994-P3a Lan-Mir-1994-P3b Lan-Mir-1994-P4a Lan-Mir-1994-P4b Lgi-Mir-1994-P1 Lgi-Mir-1994-P2 Npo-Mir-1994-P1 Npo-Mir-1994-P2 Obi-Mir-1994-P1 Obi-Mir-1994-P2 Ovu-Mir-1994-P1 Ovu-Mir-1994-P2 |
Node of Origin (locus) | Lophotrochozoa |
Node of Origin (family) | Lophotrochozoa |
Genome context (Efe_combined) |
Efet.01.1510066: 31-166 [-] |
Precursor (pre-Mir +30nt flank) | AAGGAGGACCCACUUGCUUCGCCCGUGUGCGUGCAUGCUCAACAGGCGUCUACCUAGUGUCCUACGCUAGGUAUGCGACUGAUUGAUGCAUGACAUGCACCAAUGCAUCACCGGUGAGACAGUGCGUCCUCCCUCGGet precursor sequence |
Structure | 10 20 30 40 50 60 AA-- C U CU C --------- - - -| G C UC GGAGGAC CAC UG UCGCC GU GUGCGUG CAUGC UCAA CAG CGU UACCUAGUG \ CCUCCUG GUG AC AGUGG CA CACGUAC GUACG AGUU GUC GCG AUGGAUCGC C GCUC C - AG C CUACGUAAC A U A^ A U AU 130 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Efe-Mir-1994_5p* |
mirBase accession | None |
Sequence |
0- AAGGAGGACCCACUUGCUUCGCC -23
Get sequence
|
Mature sequence | Efe-Mir-1994_3p |
mirBase accession | None |
Sequence |
114- UGAGACAGUGCGUCCUCCCUCG -136
Get sequence
|