MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-1993-P1

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1993-P2 
Orthologues Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Cgi-Mir-1993  Cte-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Esc-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.1536008: 48-133 [-]
Precursor
(pre-Mir +30nt flank)
AUAGGCUAGUAGGUAGGGUAAAUGGGAGUUUCGGGAAUAGCUGCAGAAUGCUGUGAAUAAUAUUGCGUCCAUCGAAUAUUAUCGUAUAACCAGUAUUAUGCUGUUAUUCACCGAGACGCCCGAACGUUCAUCAUCGUCUGGUCCAC
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Structure
        10        20          30         40        50        60        70  
AUAGGCUAGUAGGUAGGGUAAA--    A       -|      U   G      GUGAAUAAUAUUGCGUCCA 
                        UGGG GUUUCGG GAAUAGC GCA AAUGCU                   \
                        GCCC CAGAGCC CUUAUUG CGU UUAUGA                   U
CACCUGGUCUGCUACUACUUGCAA    G       A^      U   A      CCAAUAUGCUAUUAUAAGC 
    140       130       120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-1993-P1_5p*
mirBase accessionNone
Sequence 
0- UCGGGAAUAGCUGCAGAAUGCU -22
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Mature sequence

Efe-Mir-1993-P1_3p
mirBase accessionNone
Sequence 
63- UAUUAUGCUGUUAUUCACCGAGA -86
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