| MirGeneDB ID | Efe-Mir-1992-P3 |
|---|
| Family name |
MIR-1992 (all species) |
|---|
| Seed |
CAGCAGU |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-1992-P4
|
|---|
| Orthologues |
Cgi-Mir-1992
Cte-Mir-1992
Esc-Mir-1992
Lan-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ovu-Mir-1992
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Platytrochozoa
|
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Genome context
(Efe_combined) |
Efet.01.192781: 1365-1426 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUUAUAUGACGCAGCUGAGAGCUUAAUCGCAGCAGUGGAUGACUACUGGUAGUUAUUUUAGACUAACCUAUCAGCAGUUAUACCACUGAUGUGCUAGAGCGUCGGAUUCGACUCCCCACCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUAUAUGACGCAGCUGA- - AAU G -| A GUUAUUUU
GA GCUU CGCA CAGUGG AUGACU CUGGUA \
CU CGAG GUGU GUCACC UAUUGA GACUAU A
AACCACCCCUCAGCUUAGG G AUC A A^ C CCAAUCAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1992-P3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAGUGGAUGACUACUGGUA -21
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1992-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCAGCAGUUAUACCACUGAUGU -62
Get sequence
|
|---|
