MirGeneDB ID | Efe-Mir-1990-P2 |
Family name |
MIR-1990 (all species) |
Seed |
GUAAGUU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-1990-P1
Efe-Mir-1990-P3
|
Orthologues |
Cgi-Mir-1990
Cte-Mir-1990-P2
Lan-Mir-1990
Lgi-Mir-1990
Npo-Mir-1990
|
Node of Origin (locus) |
Annelida
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (Efe_combined) |
scaffold3172-size40789: 4275-4334 [-]
|
Precursor (pre-Mir +30nt flank) |
ACUGAUUCGUCGAUGCGUUGGAUGCGAAGUUGUAAGUUGACAUAGUCCCAGGAUACGGGAAUGAAACCCGGGACUUUAGCAACUUCCAGCUCGUCAUCCGAUCCACAGCGUUCCCCAUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUGAUUCGUCGAUGCG-- -| A U ACAU A AUACGG
UUGGAUG CGA GUUG AAGUUG AGUCCC GG G
AGCCUAC GCU CGAC UUCAAC UCAGGG CC A
CCUACCCCUUGCGACACCU U^ - C GAUU C AAAGUA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-1990-P2_5p |
mirBase accession | None |
Sequence |
0- UGUAAGUUGACAUAGUCCCAGG -22
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|
Star sequence |
Efe-Mir-1990-P2_3p* |
mirBase accession | None |
Sequence |
38- CGGGACUUUAGCAACUUCCAGC -60
Get sequence
|