Mir-10-P4c

MirGeneDB ID

Efe-Mir-10-P4c

Family name

MIR-10 (all species)

Seed

GAAGCUC

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-10-P1i Efe-Mir-10-P1j Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Efe-Mir-10-P3g Efe-Mir-10-P3h Efe-Mir-10-P3i Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P5a Efe-Mir-10-P5b Efe-Mir-10-P6 Efe-Mir-10-P7

Orthologues

Aae-Mir-10-P4 Asu-Mir-10-P4 Bge-Mir-10-P4 Bpl-Mir-10-P4 Cte-Mir-10-P4 Dan-Mir-10-P4 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Nve-Mir-10 Tca-Mir-10-P4

Node of Origin (locus)

E. fetida

Node of Origin (family)

Eumetazoa

Genome context
(Efe_combined)

Efet.01.438967: 284-359 [-]

Precursor
(pre-Mir +30nt flank)

CUGACUGGUCGAGUGUAGGCCAACCAGCGAACUCUGUAGACGAGGGUUUUUGUGUGGACCAGCAAUGGAUCAACUCAAAAUCACAGAAGCUCCGUUCUACGGGUCUGCUGGUUGCCUCCAGCAACACGAACGACGG

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Structure

        10           20        30        40         50        60        
CUGACUGGUCGAGUGUA---|  C        A  U       -  A          GUGGACCAGCAAUG 
                    GGC AACCAGCG AC CUGUAGA CG GGGUUUUUGU              \
                    CCG UUGGUCGU UG GGCAUCU GC CUCGAAGACA              G
GGCAGCAAGCACAACGACCU^  -        C  -       U  -          CUAAAACUCAACUA 
    130       120        110        100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Efe-Mir-10-P4c_5p*

mirBase accession

None

Sequence

0- ACUCUGUAGACGAGGGUUUUUGU -23

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Mature sequence

Efe-Mir-10-P4c_3p

mirBase accession

None

Sequence

54- AGAAGCUCCGUUCUACGGGUCU -76

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