Mir-10-P4b

MirGeneDB ID

Efe-Mir-10-P4b

Family name

MIR-10 (all species)

Seed

GAAGCUC

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-10-P1i Efe-Mir-10-P1j Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Efe-Mir-10-P3g Efe-Mir-10-P3h Efe-Mir-10-P3i Efe-Mir-10-P4a Efe-Mir-10-P4c Efe-Mir-10-P5a Efe-Mir-10-P5b Efe-Mir-10-P6 Efe-Mir-10-P7

Orthologues

Aae-Mir-10-P4 Asu-Mir-10-P4 Bge-Mir-10-P4 Bpl-Mir-10-P4 Cte-Mir-10-P4 Dan-Mir-10-P4 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Nve-Mir-10 Tca-Mir-10-P4

Node of Origin (locus)

E. fetida

Node of Origin (family)

Eumetazoa

Genome context
(Efe_combined)

Efet.01.39653: 2193-2256 [+]

Precursor
(pre-Mir +30nt flank)

CGGUCAGUAGGAAGGCGCGUCACCGACUGUACCCUGUAGACCUGGGUUUGUGUGUGAUAUCCGGUCAACAACAGAAGCUCUGCUCUACAGGUAUGGUCGGGACGCUGAGCAACAACGUCCUCUU

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Structure

        10           20        30        40        50        60  
CGGUCAGUAGGAAGGCG---|   A           C      CCU      G   GUGAUAUC 
                    CGUC CCGACUGUACC UGUAGA   GGGUUU UGU        \
                    GCAG GGCUGGUAUGG ACAUCU   CUCGAA ACA        C
UUCUCCUGCAACAACGAGUC^   -           -      CGU      G   ACAACUGG 
  120       110        100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Efe-Mir-10-P4b_5p*

mirBase accession

None

Sequence

0- ACCCUGUAGACCUGGGUUUGUGU -23

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Mature sequence

Efe-Mir-10-P4b_3p

mirBase accession

None

Sequence

42- AGAAGCUCUGCUCUACAGGUAU -64

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