MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-10-P2j

Family name MIR-10 (all species)
Seed ACCCGUA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-10-P1i  Efe-Mir-10-P1j  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2k  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Efe-Mir-10-P6  Efe-Mir-10-P7 
Orthologues Aae-Mir-10-P2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ovu-Mir-10-P2  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sko-Mir-10-P2  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) E. fetida
Node of Origin (family) Eumetazoa
Genome context
(Efe_combined)
Efet.01.424946: 1302-1367 [-]
Precursor
(pre-Mir +30nt flank)
GUGGAAUUGGAGUGAAGCCCAGUUGGCAGAAACCCGUAAUACCAGACUUGUGUUGGAGUAAUAGAUUAUAUUCUCAAGUUUGGUAUGACCGGUCUCUGCAACUGUUGGCUCUGACAUCUGAUCAGA
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Structure
        10           20        30        40        50        60  
GUGGAAUUGGAGUGAAG-  --|     G    A   C  A            UGUUGGAGUAA 
                  CC  CAGUUG CAGA ACC GU AUACCAGACUUG           U
                  GG  GUCAAC GUCU UGG CA UAUGGUUUGAAC           A
AGACUAGUCUACAGUCUC  UU^     -    C   C  G            UCUUAUAUUAG 
    120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Efe-Mir-10-P2j_5p

mirBase accessionNone
Sequence
0- AACCCGUAAUACCAGACUUGUG -22
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Star sequence

Efe-Mir-10-P2j_3p*

mirBase accessionNone
Sequence
44- CAAGUUUGGUAUGACCGGUCUC -66
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