MirGeneDB 2.1

MirGeneDB ID

Dre-Novel-6

Family name DRE-NOVEL-6 (all species)
Seed ACAAGGG
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr3: 26193747-26193808 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCAUAAAAAUAAACUUGGCUGCAUGUUUAAAGACAAACAGCGCUAGUACAGAGCAUGUAUUUAACUGUACAAGGGUUUGUUUGUGUUUGAUCACGUGGCUUGUUUGCGCCUUCUAAUAUA
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Structure
        10          20        30        40         50          
UGGCAUAAAAAUAAACUU--   UG A  U     G      -|  G  A     GAGCAUG 
                    GGC  C UG UUAAA ACAAAC AGC CU GUACA       \
                    UCG  G AC AGUUU UGUUUG UUG GA CAUGU       U
AUAUAAUCUUCCGCGUUUGU   GU C  U     G      U^  G  A     CAAUUUA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Novel-6_5p*

mirBase accessionNone
Sequence
0- AAAGACAAACAGCGCUAGUACA -22
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Mature sequence

Dre-Novel-6_3p

mirBase accessionNone
Sequence
39- UACAAGGGUUUGUUUGUGUUUGA -62
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