| MirGeneDB ID | Dre-Novel-3 |
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| Family name |
DRE-NOVEL-3 (all species) |
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| Seed |
CUGAUCA |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
D. rerio
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Genome context
(danRer11) |
chr17: 52860985-52861045 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGCCUGCAGAGUCGCACAGGAAAGCAAACAGCCCCGGUCUUGAAUCUGGUCCCAGACUAAACAUUUGGGCUGAUCAGUGACUGCGGCUGCUUGCAUGUCUGAUUCACGUCAGCAUUCAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUGCCUGCAGAGUCGCA-- AAA A C -| A U CAGACU
CAGG GCAA CAGCC CGGUC UUGA UC GGUCC A
GUCU CGUU GUCGG GUCAG GACU AG UCGGG A
UUACUUACGACUGCACUUA GUA C C U^ - - UUUACA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCCCCGGUCUUGAAUCUGGUCC -23
Get sequence
|
|---|
| Mature sequence |
Dre-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GCUGAUCAGUGACUGCGGCUGC -61
Get sequence
|
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