MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-92-P1a1

Family name MIR-92 (all species)
Seed AUUGCAC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-92a-1
Paralogues Dre-Mir-92-P1a2  Dre-Mir-92-P1d  Dre-Mir-92-P2c  Dre-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Xtr-Mir-92-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr1: 3297377-3297435 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a1)		 Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUGGAGUCGUUUGGUCCCUUUCUGCGCAGGUUGGGAUUGGUAGCAAUGCUGUGUGUUUUGAAGGUAUUGCACUUGUCCCGGCCUGUAAAGGAUUGUGGAGAUUGUACCCCACAAAU
Get precursor sequence
Structure
        10        20          30        40        50         
UUUUUGGAGUCGUUUGGU  CU--|   GC            U   A        GUGUG 
                  CC    UUCU  GCAGGUUGGGAU GGU GCAAUGCU     U
                  GG    AGGA  UGUCCGGCCCUG UCA CGUUAUGG     U
UAAACACCCCAUGUUAGA  UGUU^   AA            U   -        AAGUU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-92-P1a1_5p*
mirBase accessionMIMAT0031953
Sequence 
0- AGGUUGGGAUUGGUAGCAAUGCU -23
Get sequence
Mature sequence

Dre-Mir-92-P1a1_3p
mirBase accessionMIMAT0001808
Sequence 
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence
Proposed targets TargetScanFish: dre-miR-92a