MirGeneDB

Gene name

Dre-Mir-455-P2-v1

Family name MIR-455 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-455-2
Paralogues Dre-Mir-455-P1-v1  Dre-Mir-455-P1-v2  Dre-Mir-455-P2-v2 
Orthologues Oan-Mir-455 
Node of Origin (locus) D. rerio
Node of Origin (family) Vertebrata
Genome context
(danRer11_plustraces2)
chr16: 51776559-51776617 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-455-P2-v1)
Mir-455-P2-v2 chr16: 51776558-51776618 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGAC
Get precursor sequence
Structure
        10           20        30        40        50        
UGUUUCCAUCGUUGUUC--  -|        G          U      A   U UGGAG 
                   CC UGAAGUGAG GUAUGUGCCC UGGACU CAU G     G
                   GG ACUUCAUUC CAUAUACGGG ACCUGA GUA C     C
CAGAAGCACAACUACAUCC  U^        A          U      C   C ACGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer site -1 relative to what is annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-455-P2-v1_5p

MirBase accessionMIMAT0011302
Sequence
0- UAUGUGCCCUUGGACUACAUUG -22
Get sequence
Seed sequenceAUGUGCC
Validated targets TargetScanFish: dre-miR-455b
Star sequence

Dre-Mir-455-P2-v1_3p*

MirBase accessionMIMAT0031993
Sequence
36- AUGCAGUCCAUGGGCAUAUACAC -59
Get sequence