MirGeneDB ID | Dre-Mir-375-P1 |
Family name |
MIR-375 (all species) |
Seed |
UUGUUCG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-375-1
|
Paralogues |
Dre-Mir-375-P2
|
Orthologues |
Aae-Mir-375
Aca-Mir-375
Ami-Mir-375
Asu-Mir-375
Bfl-Mir-375
Bge-Mir-375
Bla-Mir-375
Bpl-Mir-375
Bta-Mir-375
Cbr-Mir-375
Cel-Mir-375
Cfa-Mir-375
Cin-Mir-375
Cli-Mir-375
Cpi-Mir-375
Cpo-Mir-375
Cte-Mir-375
Dan-Mir-375
Dma-Mir-375
Dme-Mir-375
Dmo-Mir-375
Dno-Mir-375
Dpu-Mir-375
Dsi-Mir-375
Dya-Mir-375
Ebu-Mir-375
Efe-Mir-375
Esc-Mir-375
Ete-Mir-375
Gga-Mir-375
Gja-Mir-375
Hme-Mir-375
Hsa-Mir-375
Isc-Mir-375
Lan-Mir-375
Lch-Mir-375
Lgi-Mir-375
Loc-Mir-375
Mdo-Mir-375
Mml-Mir-375
Mmu-Mir-375
Npo-Mir-375
Oan-Mir-375
Obi-Mir-375
Ocu-Mir-375
Ovu-Mir-375
Pbv-Mir-375
Pfl-Mir-375
Pmi-Mir-375
Rno-Mir-375
Sha-Mir-375
Sko-Mir-375
Spt-Mir-375
Spu-Mir-375
Sto-Mir-375
Tca-Mir-375
Tgu-Mir-375
Xtr-Mir-375
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr6: 13800103-13800160 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACUUCGAUGAAUAAAACUGCACUUGCUUUACGUUGAGCCACACGCACAAUACAUGUGGAUUCAGUUUUGUUCGUUCGGCUCGCGUUAAGCAAGUGCAGAACUUCUUCAGUGCAGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACUUCGAUGAAUAAAA--| U U AC C U AUGUG
CUGCACUUGCUU ACGU GAGCC ACG ACAA AC \
GACGUGAACGAA UGCG CUCGG UGC UGUU UG G
UUUGACGUGACUUCUUCAA^ U - CU U U ACUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-375-P1_5p* |
mirBase accession | None |
Sequence |
0- ACGUUGAGCCACACGCACAAUAC -23
Get sequence
|
Mature sequence |
Dre-Mir-375-P1_3p |
mirBase accession | MIMAT0001876 |
Sequence |
36- UUUGUUCGUUCGGCUCGCGUUA -58
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-375
|