MirGeneDB

MirGeneDB ID

Dre-Mir-199-P2-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-199-3
Paralogues Dre-Mir-199-P1-v1  Dre-Mir-199-P1-v2  Dre-Mir-199-P1-v3  Dre-Mir-199-P2-v2  Dre-Mir-199-P2-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P2-v1  Aca-Mir-199-P2-v2  Aca-Mir-199-P2-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Bta-Mir-199-P2-v1  Bta-Mir-199-P2-v2  Bta-Mir-199-P2-v3  Cfa-Mir-199-P2-v1  Cfa-Mir-199-P2-v2  Cfa-Mir-199-P2-v3  Cpi-Mir-199-P2-v1  Cpi-Mir-199-P2-v2  Cpi-Mir-199-P2-v3  Cpo-Mir-199-P2-v1  Cpo-Mir-199-P2-v2  Cpo-Mir-199-P2-v3  Ete-Mir-199-P2-v1  Ete-Mir-199-P2-v2  Ete-Mir-199-P2-v3  Hsa-Mir-199-P2-v1  Hsa-Mir-199-P2-v2  Hsa-Mir-199-P2-v3  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P2-v2  Mdo-Mir-199-P2-v3  Mml-Mir-199-P2-v1  Mml-Mir-199-P2-v2  Mml-Mir-199-P2-v3  Mmu-Mir-199-P2-v1  Mmu-Mir-199-P2-v2  Mmu-Mir-199-P2-v3  Ocu-Mir-199-P2-v1  Ocu-Mir-199-P2-v2  Ocu-Mir-199-P2-v3  Sha-Mir-199-P2-v1  Sha-Mir-199-P2-v2  Sha-Mir-199-P2-v3  Xtr-Mir-199-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr3: 47195159-47195219 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-199-P2-v1)
Mir-199-P2-v1 chr3: 47195159-47195219 [-] UCSC Ensembl
Mir-199-P2-v2 chr3: 47195159-47195219 [-] UCSC Ensembl
Mir-199-P2-v3 chr3: 47195159-47195219 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAGCCACCUCUUGCCUCCCCCUCGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAUGCUGCAGCUGAACAGUAGUCCGCACAUUGGUUAGGCUGGGCUGGGACACACACACCCGCCAAG
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Structure
        10        20          30        40        50        60
UCCAGCCACCUCUUGCCU   --|  C     C       UCA      C     AUCAUG 
                  CCC  CCU GCCUG CCAGUGU   GACUAC UGUUC      C
                  GGG  GGG CGGAU GGUUACA   CUGAUG ACAAG      U
GAACCGCCCACACACACA   UC^  U     U       CGC      -     UCGACG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-199-P2-v1_5p*

MirBase accessionMIMAT0001277
Sequence
0- CCCAGUGUUCAGACUACCUGUUC -23
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Validated targets TargetScanFish: dre-miR-199
Mature sequence

Dre-Mir-199-P2-v1_3p

MirBase accessionMIMAT0031922
Sequence
39- ACAGUAGUCCGCACAUUGGUUA -61
Get sequence