MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-181-P1a2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181a-4
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Xtr-Mir-181-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr21: 8221816-8221875 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a2)		 Mir-181-P2a2 chr21: 8221672-8221730 [-] UCSC Ensembl
Mir-181-P1a2 chr21: 8221816-8221875 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUACUAAUACCCAUCUGGUGCAUUCUGGGAACAUUCAACGCUGUCGGUGAGUUUGGAUGCAUAAUAAACCAUCGACCGUUGGCUGUGCCCUGAGAUUACCACAUACUUCGCGCAUCAAC
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Structure
        10          20        30        40        50        60 
UUUACUAAUACCCAUCU--|   CA   U   A   UU     CU       A  UUGGAUG 
                   GGUG  UUC GGG ACA  CAACG  GUCGGUG GU       \
                   CCAU  GAG CCC UGU  GUUGC  CAGCUAC CA       C
CAACUACGCGCUUCAUACA^   UA   U   G   CG     --       -  AAUAAUA 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P1a2_5p
mirBase accessionMIMAT0001623
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Dre-Mir-181-P1a2_3p*
mirBase accessionMIMAT0048653
Sequence 
38- ACCAUCGACCGUUGGCUGUGCC -60
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