MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-15-P2a1

Family name MIR-15 (all species)
Seed AGCAGCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-16b
Paralogues Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Dre-Mir-15-P1b  Dre-Mir-15-P1d  Dre-Mir-15-P2a2  Dre-Mir-15-P2b  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Dre-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Xtr-Mir-15-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)
chr1: 46722416-46722480 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2a1)
Mir-15-P2a1 chr1: 46722416-46722480 [-] UCSC Ensembl
Mir-15-P1a1 chr1: 46722633-46722692 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCCGUGUGACAGACUGGCUGCCUGGCUGUAGCAGCACGUAAAUAUUGGAGUCAAAGCACUUGCGAAUCCUCCAGUAUUGACCGUGCUGCUGGAGUUAGGCGGGCCGUUUACCGUCUGCGGGGG
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Structure
        10          20        30        40         50        60 
UGGCCGUGUGACAGACU-  -          G          UA-|         UCAAAGCA 
                  GG CUGCCUGGCU UAGCAGCACG   AAUAUUGGAG        C
                  CC GGCGGAUUGA GUCGUCGUGC   UUAUGACCUC        U
GGGGGCGUCUGCCAUUUG  G          G          CAG^         CUAAGCGU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-15-P2a1_5p

mirBase accessionMIMAT0001775
Sequence
0- UAGCAGCACGUAAAUAUUGGAG -22
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Proposed targets TargetScanFish: dre-miR-16b
Star sequence

Dre-Mir-15-P2a1_3p*

mirBase accessionNone
Sequence
42- CCAGUAUUGACCGUGCUGCUGGA -65
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