MirGeneDB ID | Dpu-Novel-5 |
Family name |
DPU-NOVEL-5 (all species) |
Seed |
ACUGGGU |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Daphnia
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361858-361920 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAGCUCGACACAGAUAGCUGUUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAACAAUUUCAGCCAUUUUCAUCAGUUCGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAGCUCGACACAGAUA--| UUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUA
GCUG \
CGAC U
CGGGCUUGACUACUUUUAC^ UUUAACAAGCUGGGAUGUUACUUAUGGGUCACUGAGCAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dpu-Novel-5_5p |
mirBase accession | None |
Sequence |
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
Get sequence
|
Star sequence |
Dpu-Novel-5_3p* (predicted) |
mirBase accession | None |
Sequence |
0- GACACUACAUGUAUCUAGUAUGAC -24
Get sequence
|