MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-5

Family name DPU-NOVEL-5 (all species)
Seed ACUGGGU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_24: 361858-361920 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCUCGACACAGAUAGCUGUUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAACAAUUUCAGCCAUUUUCAUCAGUUCGGGC
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Structure
        10          20        30        40        50        60 
AGAGCUCGACACAGAUA--|   UUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUA 
                   GCUG                                       \
                   CGAC                                       U
CGGGCUUGACUACUUUUAC^   UUUAACAAGCUGGGAUGUUACUUAUGGGUCACUGAGCAU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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To
Mature sequence

Dpu-Novel-5_5p

mirBase accessionNone
Sequence
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
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Star sequence

Dpu-Novel-5_3p* (predicted)

mirBase accessionNone
Sequence
0- GACACUACAUGUAUCUAGUAUGAC -24
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