MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-3

Family name MIR-3 (all species)
Seed CACUGGG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues Aae-Mir-3-P2a1  Aae-Mir-3-P2a2  Aae-Mir-3-P2b  Bge-Mir-3-P28a-v1  Bge-Mir-3-P28a-v2  Bge-Mir-3-P28b-v1  Bge-Mir-3-P28b-v2  Bge-Mir-3-P29-v1  Bge-Mir-3-P29-v2  Dan-Mir-3-P1  Dan-Mir-3-P2  Dan-Mir-3-P3  Dma-Mir-3  Dme-Mir-3-P1  Dme-Mir-3-P2  Dme-Mir-3-P3  Dmo-Mir-3-P1  Dmo-Mir-3-P2  Dmo-Mir-3-P3  Dsi-Mir-3-P1  Dsi-Mir-3-P2  Dsi-Mir-3-P3  Dya-Mir-3-P1  Dya-Mir-3-P2  Dya-Mir-3-P3  Hme-Mir-3-P14  Hme-Mir-3-P15  Hme-Mir-3-P16  Hme-Mir-3-P17  Hme-Mir-3-P18  Hme-Mir-3-P19  Hme-Mir-3-P20  Hme-Mir-3-P21  Hme-Mir-3-P22  Hme-Mir-3-P23  Hme-Mir-3-P24  Hme-Mir-3-P25  Hme-Mir-3-P26  Hme-Mir-3-P27  Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_24: 361462-361522 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAAUGAAAAAUAACCUGGUAUUAGUCUAGGUGAACUUUGCCCAGAUUAGACUUGUAAUUGUUAGUCACUGGGUAAAGUUUGUCCGUUGACUAGUUCCACUUACCUCUUCUGCCUGUUC
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Structure
        10          20        30          40        50        60
AAGAAAUGAAAAAUAACC--   U       UA-  -|             AUUA    UGUA 
                    UGG AUUAGUC   GG UGAACUUUGCCCAG    GACU    A
                    ACC UGAUCAG   CC GUUUGAAAUGGGUC    CUGA    U
CUUGUCCGUCUUCUCCAUUC   U       UUG  U^             A---    UUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Dpu-Mir-3_5p*
mirBase accessionNone
Sequence 
0- AGGUGAACUUUGCCCAGAUUAGACU -25
Get sequence
Mature sequence

Dpu-Mir-3_3p
mirBase accessionNone
Sequence 
37- UCACUGGGUAAAGUUUGUCCGUUG -61
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