MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-279-o6

Family name MIR-279 (all species)
Seed GACUAGA
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-279-o1  Dpu-Mir-279-o2  Dpu-Mir-279-o3  Dpu-Mir-279-o4  Dpu-Mir-279-o5 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Dma-Mir-279-o6  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_63: 523653-523745 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUCAAGUCUCGCCACCACUUGUUGCCGGGUGAUUGUGUGUCUGGUCCAUGUUAACUUGAUUUGGCGACCGAACUGAAAAUUGUUGGUUGAUAAUUUCAUGACUAGAUCCACACUCAUCCAGUGACACAGUUGGUAAUUCGUCCGCUUUUC
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Structure
        10         20         30        40        50        60        70      
CUCUUCAAGUCUCGCCACC-   -|  UG C      U    UG       C   UUAACUUGAUUUGGCGACCGAA 
                    ACU UGU  C GGGUGA UGUG  UCUGGUC AUG                      C
                    UGA ACA  G CCUACU ACAC  AGAUCAG UAC                      U
CUUUUCGCCUGCUUAAUGGU   C^  GU A      C    CU       -   UUUAAUAGUUGGUUGUUAAAAG 
 150       140       130       120       110        100        90        80
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Dpu-Mir-279-o6_5p*
mirBase accessionNone
Sequence 
0- GGUGAUUGUGUGUCUGGUCCAUG -23
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Mature sequence

Dpu-Mir-279-o6_3p
mirBase accessionNone
Sequence 
71- UGACUAGAUCCACACUCAUCCA -93
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