MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-283
Paralogues Dpu-Mir-216-P2 
Orthologues Aae-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cgi-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Hme-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Tca-Mir-216-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_1: 1848726-1848812 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P1)		 Mir-12 DAPPUscaffold_1: 1847845-1847905 [-] Ensembl
Mir-216-P1 DAPPUscaffold_1: 1848726-1848812 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGACACUGCUGAUGGCUUCUGAUACGGCCAAAUAUCAGCAGGUAAUUCUGGGCAGUUAUUAUCCUUGGACUUGAUUAAAAUACAAGGAAGAACCCAGACUGCCGGCUGGUAUCAGGCCGUGAGAAUGCCCACAACCCCACACACAC
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Structure
        10            20        30        40        50        60        70   
AAGACACUGCUGAUGGC----|   GA       AA        A    AU      CAGUUAUUAUCCUUGGACU 
                     UUCU  UACGGCC  AUAUCAGC GGUA  UCUGGG                   U
                     AAGA  GUGCCGG  UAUGGUCG CCGU  AGACCC                   G
CACACACACCCCAACACCCGU^   --       AC        G    C-      AAGAAGGAACAUAAAAUUA 
     140       130         120       110       100         90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-216-P1_5p
mirBase accessionMIMAT0012644
Sequence 
0- AAAUAUCAGCAGGUAAUUCUGGG -23
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Star sequence

Dpu-Mir-216-P1_3p*
mirBase accessionNone
Sequence 
65- CAGACUGCCGGCUGGUAUCAGG -87
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