MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-92a-2
Paralogues Dno-Mir-92-P1a  Dno-Mir-92-P1d  Dno-Mir-92-P2a  Dno-Mir-92-P2c  Dno-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(dasNov3)
JH573198: 1052961-1053022 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-17-P1c JH573198: 1052307-1052364 [+] UCSC Ensembl
Mir-17-P2c JH573198: 1052463-1052527 [+] UCSC Ensembl
Mir-17-P4c JH573198: 1052698-1052758 [+] UCSC Ensembl
Mir-19-P2c JH573198: 1052822-1052884 [+] UCSC Ensembl
Mir-92-P1c JH573198: 1052961-1053022 [+] UCSC Ensembl
Mir-92-P2c JH573198: 1053115-1053179 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCUCCAGCAUUUGUACCCAUUCAUCCAUGGGUGGGGAUUUGUUGCAUUACUUGUGCUUAUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAACGAGGAUUUUAUCGUCUUAUUU
Get precursor sequence
Structure
        10        20          30        40        50        60 
CGUCUCCAGCAUUUGUACCCA--|  A         G     UU  U   U    UGUGCUU 
                       UUC UCCAUGGGU GGGAU  GU GCA UACU       \
                       AAG AGGUGUCCG CCCUG  CA CGU AUGA       A
UUUAUUCUGCUAUUUUAGGAGCA^  A         G     UU  -   U    AAUAUAU 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Dno-Mir-92-P1c_5p* (predicted)

mirBase accessionMIMAT0047583
Sequence
0- GGGUGGGGAUUUGUUGCAUUACU -23
Get sequence
Mature sequence

Dno-Mir-92-P1c_3p

mirBase accessionMIMAT0047582
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
Get sequence