| MirGeneDB ID | Dno-Mir-486 |
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| Family name |
MIR-486 (all species) |
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| Seed |
CCUGUAC |
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| Species |
Nine-banded armadillo (Dasypus novemcinctus) |
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| MiRBase ID |
dno-mir-486
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-486
Cfa-Mir-486
Cpo-Mir-486
Ete-Mir-486
Hsa-Mir-486
Mml-Mir-486
Mml-Mir-486-as
Mmu-Mir-486
Ocu-Mir-486
Rno-Mir-486
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(dasNov3) |
JH570030: 1750326-1750389 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCAGCUCGGAUCGCCACCCUCCCUGGGGGAUCCUGUACUGAGCUGCCCCGAGGCCCUGCCUUGUGCCCCACUCGGGGCAGCUCAGUACAGGAUGCGUCGGGGUGGGAGUCAGCCAGCGGCGAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAGCUCGGAUCGCCAC--| U GGG GCCCUGCC
CC CCCUGG AUCCUGUACUGAGCUGCCCCGAG U
GG GGGGCU UAGGACAUGACUCGACGGGGCUC U
GGAGCGGCGACCGACUGAG^ U GCG ACCCCGUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Mir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dno-Mir-486_5p |
| mirBase accession | MIMAT0047912 |
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| Sequence |
0- UCCUGUACUGAGCUGCCCCGAG -22
Get sequence
|
|---|
| Star sequence |
Dno-Mir-486_3p* |
| mirBase accession | MIMAT0047913 |
|---|
| Sequence |
42- CGGGGCAGCUCAGUACAGGAUG -64
Get sequence
|
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