Mir-30-P2b

MirGeneDB ID

Dno-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-30c-2

Paralogues

Dno-Mir-30-P1a Dno-Mir-30-P1b Dno-Mir-30-P1d Dno-Mir-30-P2a Dno-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dre-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH582191: 2086952-2087013 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P2b JH582191: 2086952-2087013 [-] UCSC Ensembl
Mir-30-P1b JH582191: 2112177-2112239 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUAGAGAACACUGAGUGACAGGUACUGUAAACAUCCUACACUCUCAGCUGUGAAAAUUAAGAAAGCUGAGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAAGAGAAAU

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Structure

        10        20         30            40        50        60 
CCAUCCUAGAGAACACUGAGUGA -     CU----|      U   ACA         GUGAAA 
                       C AGGUA      GUAAACA CCU   CUCUCAGCU      A
                       G UCCGU      CAUUUGU GGA   GAGAGUCGA      U
UAAAGAGAAAUCAACUAAAG--- U     CUCUCU^      C   A--         AAGAAU 
120       110          100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Dno-Mir-30-P2b_5p

mirBase accession

MIMAT0047560

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Dno-Mir-30-P2b_3p*

mirBase accession

MIMAT0047562

Sequence

40- CUGAGAGAAGGCUGUUUACUCU -62

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