Mir-181-P2b

MirGeneDB ID

Dno-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-181b-2

Paralogues

Dno-Mir-181-P1a Dno-Mir-181-P1b Dno-Mir-181-P1c Dno-Mir-181-P2a Dno-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dre-Mir-181-P2b2 Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH568938: 1611595-1611654 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P2b JH568938: 1611595-1611654 [-] UCSC Ensembl
Mir-181-P1b JH568938: 1612852-1612911 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCAACUAGAAACUUUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGCAUCCGAAUCAACUCGCUGAUCAAUGAAUGCAAACUGCGGACCAAAAUACCCAAGGAAGCUAGA

Get precursor sequence

Structure

        10         20         30        40        50        60
CACCAACUAGAAACUUUGA-   -|    CUCAA         CU           UGCAU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     C
                    ACC GGCGU     GUAAGUAAC  UAGUCGCUCAA     C
AGAUCGAAGGAACCCAUAAA   A^    CAAAC         --           CUAAG 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Dno-Mir-181-P2b_5p

mirBase accession

MIMAT0047692

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Star sequence

Dno-Mir-181-P2b_3p* (predicted)

mirBase accession

MIMAT0047694

Sequence

38- CUCGCUGAUCAAUGAAUGCAAA -60

Get sequence