MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-106a
Paralogues Dno-Mir-17-P1a  Dno-Mir-17-P1d  Dno-Mir-17-P2a  Dno-Mir-17-P2c  Dno-Mir-17-P4a  Dno-Mir-17-P4c  Dno-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)
JH573198: 1052307-1052364 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)
Mir-17-P1c JH573198: 1052307-1052364 [+] UCSC Ensembl
Mir-17-P2c JH573198: 1052463-1052527 [+] UCSC Ensembl
Mir-17-P4c JH573198: 1052698-1052758 [+] UCSC Ensembl
Mir-19-P2c JH573198: 1052822-1052884 [+] UCSC Ensembl
Mir-92-P1c JH573198: 1052961-1053022 [+] UCSC Ensembl
Mir-92-P2c JH573198: 1053115-1053179 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGCUACAGGAAUAGGCCUUGGCCGUGUAAAAGUGCUUGCAGUGCAGGUAGUUUUUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAAUGGCUACU
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Structure
        10          20        30         40        50        
UUUUGCUACAGGAAUAG--   U   CC      -|          G     G   UUUU 
                   GCC UGG  GUGUAA AAGUGCUUGCA UGCAG UAG    U
                   UGG ACC  UACAUU UUCACGAACGU ACGUC AUC    G
UCAUCGGUAACUAAUUUAG   U   AU      C^          A     -   UAGA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Dno-Mir-17-P1c_5p

mirBase accessionMIMAT0047604
Sequence
0- AAAAGUGCUUGCAGUGCAGGUAG -23
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Star sequence

Dno-Mir-17-P1c_3p* (predicted)

mirBase accessionMIMAT0047605
Sequence
35- ACUGCAAUGCAAGCACUUCUUAC -58
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