| MirGeneDB ID | Dno-Mir-1247 |
|---|
| Family name |
MIR-1247 (all species) |
|---|
| Seed |
CCCGUCC |
|---|
| Species |
Nine-banded armadillo (Dasypus novemcinctus) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1247
Cfa-Mir-1247
Cpo-Mir-1247
Ete-Mir-1247
Hsa-Mir-1247
Mml-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Rno-Mir-1247
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(dasNov3) |
1856299926_name_242414572_mate_1856245667: 64-121 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCGCCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUCGCUCUCCGGCCCGGGAACUUCGAGACUGGAGCGCCCGAGCCGAGCCACCGUCGCCGACCCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGCCCGGCGCAGCCCC----| CGC A C C UGC C ACGUCGC
GGC CGGGCGC CC GUC CG GU CCCGG \
CCG GCCCGCG GG CAG GC CA GGGCC U
GGCCCAGCCGCUGCCACCGAG^ A-- A U A UU- A CGGCCUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
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| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dno-Mir-1247_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCGUCCCGUGCGUCCCCGGAC -23
Get sequence
|
|---|
| Star sequence |
Dno-Mir-1247_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CGGGAACUUCGAGACUGGAGC -58
Get sequence
|
|---|
