Mir-9-P9

MirGeneDB ID

Dmo-Mir-9-P9

Family name

MIR-9 (all species)

Seed

UAAAGCU

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-4

Paralogues

Dmo-Mir-9-P10 Dmo-Mir-9-P11 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dmo-Mir-9-P13

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P9 Dme-Mir-9-P9 Dsi-Mir-9-P9 Dya-Mir-9-P9 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Tca-Mir-9-o9-v1 Tca-Mir-9-o9-v2 Xbo-Mir-9

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Dmoj_caf1)

scaffold_6496: 20936638-20936694 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P9)

Mir-2-P6c scaffold_6496: 20935964-20936029 [-] Ensembl
Mir-2-P6b scaffold_6496: 20936142-20936210 [-] Ensembl
Mir-2-P6a scaffold_6496: 20936318-20936375 [-] Ensembl
Mir-2-P5 scaffold_6496: 20936468-20936531 [-] Ensembl
Mir-9-P9 scaffold_6496: 20936638-20936694 [-] Ensembl
Mir-279-P2 scaffold_6496: 20936799-20936877 [-] Ensembl
Mir-3-P1 scaffold_6496: 20936995-20937055 [-] Ensembl
Mir-3-P2 scaffold_6496: 20937123-20937187 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCUAUAUCGUAUAGAGGUUGCAAUUAGUUUCUUUGGUCGUCCAGCCUUAGGUGAUUUCUCUGAUCAUAAAGCUAGACAACCAUUGAAGUUCGUUGUGGCAUAAGCAGCGCCUAUAUA

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Structure

        10          20        30        40        50         
UCUAUAUCGUAUAGAGG--|UG    U GU   UU    C   C   CUUAG    UUUC 
                   U  CAAU A  UUC  UGGU GUC AGC     GUGA    \
                   G  GUUG U  AAG  ACCA CAG UCG     UACU    U
AUAUAUCCGCGACGAAUAC^GU    C UG   UU    A   A   AAA--    AGUC 
     110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-9-P9_5p*

mirBase accession

None

Sequence

0- CUUUGGUCGUCCAGCCUUAGGUGA -24

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Mature sequence

Dmo-Mir-9-P9_3p

mirBase accession

MIMAT0008629

Sequence

35- AUAAAGCUAGACAACCAUUGAA -57

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