MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-2-P9

Family name MIR-2 (all species)
Seed UAAGGAA
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues Dmo-Mir-2-P1  Dmo-Mir-2-P2a  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dmo-Mir-2-P3b  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dmo-Mir-2-P4b-v1  Dmo-Mir-2-P4b-v2  Dmo-Mir-2-P5  Dmo-Mir-2-P6a  Dmo-Mir-2-P6b  Dmo-Mir-2-P6c  Dmo-Mir-2-P7  Dmo-Mir-2-P8 
Orthologues Asu-Mir-2-o9  Dan-Mir-2-P9  Dme-Mir-2-P9-v1  Dme-Mir-2-P9-v2  Dsi-Mir-2-P9-v1  Dsi-Mir-2-P9-v2  Dya-Mir-2-P9-v1  Dya-Mir-2-P9-v2 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Dmoj_caf1)
scaffold_6540: 5225196-5225264 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAGCGAUAUCAAUUUAUAUCGAGUUAUCUAAGGAAAUAGUAGCCGUGAUUUUACAUUUCAACCUAUUACAUAUCACAGUUGCUGUUUCUUUUAGAUAGCUCUUUUGUAAGCAGCCUAACAGUCGGU
Get precursor sequence
Structure
        10         20         30         40        50        60   
UUGAAGCGAUAUCAAUU-    UC-         -|             C     UUUACAUUUC 
                  UAUA   GAGUUAUCU AAGGAAAUAGUAGC GUGAU          A
                  AUGU   CUCGAUAGA UUUCUUUGUCGUUG CACUA          A
UGGCUGACAAUCCGACGA    UUU         U^             A     UACAUUAUCC 
       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-2-P9_5p

mirBase accessionNone
Sequence
0- CUAAGGAAAUAGUAGCCGUGAU -22
Get sequence
Star sequence

Dmo-Mir-2-P9_3p*

mirBase accessionNone
Sequence
46- CACAGUUGCUGUUUCUUUUAGAU -69
Get sequence