| MirGeneDB ID | Dan-Mir-965 |
|---|
| Family name |
MIR-965 (all species) |
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| Seed |
AAGCGUA |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Aae-Mir-965
Bge-Mir-965
Dma-Mir-965
Dme-Mir-965
Dmo-Mir-965
Dpu-Mir-965
Dsi-Mir-965
Dya-Mir-965
Hme-Mir-965
Tca-Mir-965
|
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| Node of Origin (locus) |
Pancrustacea
|
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| Node of Origin (family) |
Pancrustacea
|
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Genome context
(Dana_caf1) |
scaffold_12943: 4147981-4148044 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGGGUUUUCUGGAAGCUCAACCCUUUUGGGGGGUCAAACUGUACGUUCUAUGUGGCAAUCUUAGAAAUUCAUAAGCGUAUAGCUUUUCCCCUUAAAAGUUGAAGCAAAGUCAACAAAUCUCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUGGGUUUUCUGGAAGC----| CC UC A C UGGCAAUC
UCAAC UUUUGGGGGG AA CUGUACGUU UAUG \
AGUUG AAAAUUCCCC UU GAUAUGCGA AUAC U
AACUCUAAACAACUGAAACGA^ -- UU C - UUAAAGAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dan-Mir-965_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGUCAAACUGUACGUUCUAUG -23
Get sequence
|
|---|
| Mature sequence |
Dan-Mir-965_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UAAGCGUAUAGCUUUUCCCCUU -64
Get sequence
|
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