Mir-31-P2

MirGeneDB ID

Dan-Mir-31-P2

Family name

MIR-31 (all species)

Seed

GGCAAGA

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-31b

Paralogues

Dan-Mir-31-P1

Orthologues

Aae-Mir-31 Aca-Mir-31 Ami-Mir-31 Asu-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cgi-Mir-31 Cin-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dma-Mir-31 Dme-Mir-31-P2 Dmo-Mir-31-P2 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Dsi-Mir-31-P2 Dya-Mir-31-P2 Ebu-Mir-31 Efe-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Hme-Mir-31 Hsa-Mir-31 Isc-Mir-31 Lch-Mir-31 Lgi-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mml-Mir-31 Mmu-Mir-31 Mun-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ovu-Mir-31 Pbv-Mir-31 Pfl-Mir-31 Rno-Mir-31 Sha-Mir-31 Sko-Mir-31 Spt-Mir-31 Spu-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_13047: 712447-712538 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GACAGCAUCCUCGAAGACAAAUAAUGAAUUUGGCAAGAUGUCGGAAUAGCUGAGAGCACAGAGGAUCGAGCGAGUCAUCGACCGAGACGAAUUCCAAAGCGGCUAUGCCUCAUCUAGUCAAUUACAUUACUUUGACACUUUCCACGAGGGAU

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Structure

        10         20         30        40        50        60        70      
GACAGCAUCCUCGAAGA-    -|    AAU     A     UC  A       AGAGCACAGAGGAUCGAGCGAGU 
                  CAAA UAAUG   UUGGC AGAUG  GG AUAGCUG                       \
                  GUUU AUUAC   AACUG UCUAC  CC UAUCGGC                       C
UAGGGAGCACCUUUCACA    C^    AUU     A     U-  G       GAAACCUUAAGCAGAGCCAGCUA 
150       140       130       120       110        100        90        80

Deep sequencing

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3' NTU

Motifs

Tissue expression

Da

Mature sequence

Dan-Mir-31-P2_5p

mirBase accession

MIMAT0008469

Sequence

0- UGGCAAGAUGUCGGAAUAGCUGA -23

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Star sequence

Dan-Mir-31-P2_3p*

mirBase accession

None

Sequence

70- GGCUAUGCCUCAUCUAGUCAAU -92

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