MirGeneDB 2.1

MirGeneDB ID

Dan-Mir-281-P1-v2

Family name MIR-281 (all species)
Seed UGUCAUG
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-281-1
Paralogues Dan-Mir-281-P1-v1  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2 
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cgi-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Ebu-Mir-281  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281  Tca-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_13266: 2568767-2568827 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v2)
Mir-281-P1-v1 scaffold_13266: 2568766-2568828 [+] Ensembl
Mir-281-P1-v2 scaffold_13266: 2568767-2568827 [+] Ensembl
Mir-281-P2-v1 scaffold_13266: 2568952-2569020 [+] Ensembl
Mir-281-P2-v2 scaffold_13266: 2568953-2569021 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGACUAUCUCGAAUGCGAAUACGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAUACCUAUAACACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGCUUCGCUCCGAUCACU
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Structure
        10           20        30        40         50          
UAGACUAUCUCGAAUGC---|    CG  A           UG-     C      CCAGAUA 
                    GAAUA  UG AUAAAGAGAGC   UCCGU GACAGU       \
                    CUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA       C
UCACUAGCCUCGCUUCGCAG^    A-  A           UUA     -      CAAUAUC 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da
Star sequence

Dan-Mir-281-P1-v2_5p*

mirBase accessionMIMAT0008428
Sequence
0- AAGAGAGCUGUCCGUCGACAGUC -23
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Mature sequence

Dan-Mir-281-P1-v2_3p

mirBase accessionMIMAT0008429
Sequence
38- CUGUCAUGGAAUUGCUCUCUUUG -61
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