| MirGeneDB ID | Dan-Mir-1003 |
|---|
| Family name |
MIR-1003 (all species) |
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| Seed |
CUCACAU |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dme-Mir-1003
Dmo-Mir-1003
Dsi-Mir-1003
Dya-Mir-1003
|
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| Node of Origin (locus) |
Drosophila
|
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| Node of Origin (family) |
Drosophila
|
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Genome context
(Dana_caf1) |
scaffold_13340: 4690341-4690403 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGCGAACUGGCGCUCAAGCUACGCCGAAGGUGAGUAUAGUGGAUGUGGGUGGCUCUUAUUUGGCCGGUCCUCUCACAUCUCCAUAUUCACAGGCGUCGAGAGCUGCGCCACAAGUAUGGUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCGCGAACUGGCGCUCA- ----| GAAG AGU U CUCUUAU
AGCU ACGCC GUGAGUAU GGAUGUGGG GG U
UCGA UGCGG CACUUAUA UCUACACUC CC U
CAUGGUAUGAACACCGCG GAGC^ A--- CC- U UGGCCGG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dan-Mir-1003_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGAGUAUAGUGGAUGUGGGUGG -23
Get sequence
|
|---|
| Mature sequence |
Dan-Mir-1003_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UCUCACAUCUCCAUAUUCACAG -63
Get sequence
|
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