| MirGeneDB ID | Cte-Mir-2693 |
|---|
| Family name |
MIR-2693 (all species) |
|---|
| Seed |
AGUCUAG |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
cte-mir-2693
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Efe-Mir-2693-P1
Efe-Mir-2693-P2
|
|---|
| Node of Origin (locus) |
Annelida
|
|---|
| Node of Origin (family) |
Annelida
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_18: 712332-712390 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCACCCUGACGACAUCGCUCGUGGGUCUCAGAAAUUGUAUACUAGACUAGUUCGAAGUCUAUUUGCUAGUCUAGUGUACAGUUCAUGGGAUCUCAGAGCACUGACUUCUCCGAAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCACCCUGACGACAUC--| GU GA UCGAAG
GCUC GGGUCUCA AAUUGUAUACUAGACUAGU \
CGAG UCUAGGGU UUGACAUGUGAUCUGAUCG U
GGUAAAGCCUCUUCAGUCA^ AC AC UUUAUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | A star has not yet been recorded from this miRNA but it is deeply conserved across sedentarian annelids. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cte-Mir-2693_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGAAAUUGUAUACUAGACUAGU -22
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-2693_3p |
| mirBase accession | MIMAT0013550 |
|---|
| Sequence |
37- UAGUCUAGUGUACAGUUCAUGG -59
Get sequence
|
|---|
