MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-252b
Paralogues Cte-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_296: 190705-190762 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1)
Mir-2001 CAPTEscaffold_296: 188019-188082 [+] Ensembl
Mir-252-P1 CAPTEscaffold_296: 190705-190762 [+] Ensembl
Mir-252-P2 CAPTEscaffold_296: 191494-191555 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACUGAGCAUGCAUCUCACUGUGACAGUGCUAAGUAGUAGUGCCGCAGGUAAUACGUUAUGAUUUACCUGCACUCUGCUGCUUAACACAAGCACGCGUGAAUAACAACAUCAUAACG
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Structure
        10         20         30        40        50         
UCACUGAGCAUGCAUCU-   -|   ACA   C          UGCC       AUACGU 
                  CAC UGUG   GUG UAAGUAGUAG    GCAGGUA      \
                  GUG GCAC   CAC AUUCGUCGUC    CGUCCAU      U
GCAAUACUACAACAAUAA   C^   GAA   A          UCA-       UUAGUA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cte-Mir-252-P1_5p

mirBase accessionMIMAT0009537
Sequence
0- CUAAGUAGUAGUGCCGCAGGUA -22
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Star sequence

Cte-Mir-252-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- CCUGCACUCUGCUGCUUAACA -58
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