MirGeneDB ID | Cte-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Polychaete worm (Capitella teleta) |
MiRBase ID |
cte-mir-242
|
Paralogues |
|
Orthologues |
Bfl-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cgi-Mir-242
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Npo-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Sko-Mir-242
Spu-Mir-242
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_453: 18518-18578 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUAAUCUCAUCCAAUCGUUAACCAUAGAUUUGCGUAGGUGUUGUGCACAGAGGUGUUACAUAAUAGUCUGUCCAUGACGCCUAGGCAUACCCGUGGUUGACGCAUCUUCAAAUUAACAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUAAUCUCAUCCAAUC--| AGAUU G UG C GGUGUUA
GUUAACCAU UGC UAGGUGU UG ACAGA \
CAGUUGGUG ACG AUCCGCA AC UGUCU C
AAACAAUUAAACUUCUACG^ CCCAU G GU C GAUAAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cte-Mir-242_5p |
mirBase accession | MIMAT0009680 |
Sequence |
0- UUGCGUAGGUGUUGUGCACAGA -22
Get sequence
|
Star sequence |
Cte-Mir-242_3p* |
mirBase accession | None |
Sequence |
39- UGUCCAUGACGCCUAGGCAUAC -61
Get sequence
|